Today we have encountered some problems with the miniseed toolbox and the LCC compiler that comes with Matlab. This compiler has a bug that causes strange results when working with 64bit variables. This bug caused some troubles when reading gapped data. Some parts of the data have been shifted in time!
To solve this problem, I recommend using the Microsoft Visual C++ Express compiler which can be downloaded from Microsoft free of charge. To select the appropriate compiler version suitable for your Matlab version please take a look here: http://www.mathworks.com/support/compilers/previous_releases.html.
The Microsoft Visual C++ Express can be downloaded from http://www.microsoft.com/express/Downloads/.
If you are working on Linux, you can use the GCC compiler.
Installing the Microsoft Visual C++ express compiler might cause some troubles, at least I had to fix some problems with the .Net framework installation. If you are encountering some problems you might find help reading this discussion. The cleanup tool mentioned in this discussion helped me to get rid of old .Net framework installations which solved my troubles with installing the Microsoft Visual C++ express compiler.
Any experiences with the miniseed toolbox and various compilers are welcome.